Package index • carmon

All functions

assemble_carmon_obj(): Assemble an object of class carmon_cop and one of class carmon_rec into a carmon object

carmon(): Perform copula-aided reconstruction, analysis and plot of a multi-omics network

centrality_report(): Display the table of results of the consensus centrality analysis of the carmon network

compute_centrality(): Find key nodes in a carmon network

copulize(): Use copulas to transfer all omics layers to the normal realm

get_network(): Extract a carmon network

multi_omics multi_omics_small multi_omics_micro: Multi-omics dataset of sleep deprivation in mouse

plot(<carmon>): Plot carmon networks

plot_report(): Plot the results of the node centrality analysis

reconstruct(): Reconstruct a multi-omics network from a list of copulized layers

which_marginals(): Print the marginal distributions currently implemented inside carmon

which_omics(): Print the omics types for which carmon is tailored on